PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943247.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 371aa    MW: 40547.6 Da    PI: 7.4007
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943247.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.4e-122348227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+ff++tGtCk+G++Ck++H++
  XP_010943247.1 23 GQPDCQFFLKTGTCKFGATCKYHHPQ 48
                    6899********************97 PP

2zf-CCCH37.44.1e-127093427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C++++rtG Ck+G  CkF+H++
  XP_010943247.1 70 KSCPYYMRTGLCKFGTACKFNHPQ 93
                    56********************97 PP

3zf-CCCH39.78.1e-13210235227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG CkyG +Ck++H++
  XP_010943247.1 210 DQPECQYYMKTGSCKYGTSCKYHHPK 235
                     689*********************96 PP

4zf-CCCH291.8e-09254280127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C f+  +G CkyG++CkF H++
  XP_010943247.1 254 PGQPVCTFYGMYGSCKYGSTCKFDHPF 280
                     57899********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.7512149IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-72148IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-102348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-62652IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-42748IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5026694IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-66894IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-56893IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-96993IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-57192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986208236IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6208235IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10210235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6211237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5214236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5252279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817253281IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4253280IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-7255280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGVIADTIIL ITFGSGELPE RDGQPDCQFF LKTGTCKFGA TCKYHHPQDK HDPHPVQLNI  60
LGLPLRKDEK SCPYYMRTGL CKFGTACKFN HPQPTSHATM LPVTGPSPYG STGYPAASPS  120
GLPLIAGLSM WPFSRPPYMS NQHIQGVPCM SLVLPPTQGA MPVQQGWSTD TGGINNVASA  180
GVVGSTQISN PKHHAQSGSS TPVNFPERPD QPECQYYMKT GSCKYGTSCK YHHPKERNQV  240
AMCTIGPLGL PLRPGQPVCT FYGMYGSCKY GSTCKFDHPF MGYYNYTLPA FSLPGVPDHT  300
VLFSDSRNSQ AMWMPSEDSP SKTMRLLDQH VKSETSEEPQ GSDDNNHGNH STQTSPSHIA  360
HHSESPEKYS D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943247.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X3
TrEMBLM0SII71e-144M0SII7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P28210_0011e-144(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-65zinc finger protein 1